RnoEX6043734 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34554351-34562830:+
Coord C1 exon
chr13:34554351-34554501
Coord A exon
chr13:34560091-34560334
Coord C2 exon
chr13:34562640-34562830
Length
244 bp
Sequences
Splice sites
3' ss Seq
GACTTTATGCTGTGTTCTAGGTG
3' ss Score
10.73
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
CATGCTGGACTATGACACGGAGAACCTGAACTCTGAGGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATCGAGAAGTTCAGCTTCCGAAGCCAGGAGGATCTAAATGAGCCAATCAAGCGAGATGGCAAGAAGGATTGTGATATC
Seq A exon
GTGTCCCGAGATGGAGGAGCAGCCTCACCCGCCACCGAGGGCCGGGGAGGTAGTGAGGTAGAAGGAGGCAGGATGGCTTTGGACAACAAGACCTCCCTGCTCAACACACAGCCTCCACGTGCCTTTCCGGGGCCAAGAGCACGGGAGTACAACCCGTATCCCTACTCTGACACCATCAACACCTATGACAAGACGGCTCTGAAGGAAGCAGTGTTTGACGATGACATGGAGCAGCTCCGAGATG
Seq C2 exon
TGCCCATTGACCACTCGGACCTGGTGGCTGACTTGCTGAAAGAGCTGTCCAACCACAACGAGCGTGTGGAGGAGCGGAAGGGCGCACTCCTGGAGCTGCTTAAGATCACCAGGGAGGACAGCCTGGGCGTGTGGGAGGAGCACTTCAAGACCATCCTGCTGCTGCTGCTGGAAACTCTCGGAGACAAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376-'74-76,'74-73,77-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(11.9=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGACTATGACACGGAGA
R:
TCTTGAAGTGCTCCTCCCACA
Band lengths:
299-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]