GgaINT1009544 @ galGal4
Intron Retention
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25600501-25600747:-
Coord C1 exon
chr7:25600699-25600747
Coord A exon
chr7:25600615-25600698
Coord C2 exon
chr7:25600501-25600614
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
3' ss Seq
ACCACCCCGCGCCTTTTCAGGGC
3' ss Score
9.66
Exon sequences
Seq C1 exon
GTGTCTCGAGATGGTGGCCTTGCGGTACCTACCAGCGATGTCCGAGGAG
Seq A exon
GTAGTGATACTGTAGAAGGAGGAAGGATGGCTTTAGATAACAAAACCTCCCTACTTAACACTCAACCACCCCGCGCCTTTTCAG
Seq C2 exon
GGCCACGTGCTCGAGAGTATAACCCCTATCCTTATTCCGACACAATTAACACTTATGACAAGACTGCCCTCAAGGAAGCAGTTTTTGATGATGACATGGATCAGCTTCGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCGAGATGGTGGCCTT
R:
TCCCGAAGCTGATCCATGTCA
Band lengths:
160-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]