GgaALTA0006321-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44731351-44734550:-
Coord C1 exon
chr2:44734444-44734550
Coord A exon
chr2:44731593-44731595
Coord C2 exon
chr2:44731351-44731592
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GACGTGTTTCTGAACAATAGAAG
3' ss Score
3.27
Exon sequences
Seq C1 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
Seq A exon
AAG
Seq C2 exon
AAGCCTGTGCGAAGAAGATACGAGTCTTACGGGATGTACTCAGATGATGATGCCAACAGTGATGCATCAAGTGCCTGTTCAGAAAGGTCCTACAGCTCTAGGAACGGAAGCATACCGACATATATGAGACAGACAGAAGATGTGGCTGAAGTCCTAAATCGCTGTGCTAGCTCCAACTGGTCAGAGAGAAAAGAAGGCCTTCTGGGCCTGCAAAATTTATTAAAGAACCAGAGAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-47-50,47-49-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116403=TAN=PU(49.4=46.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTCGTCAGTTAGCGCTA
R:
CGTATCTTCTTCGCACAGGCT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]