DreALTA0007985-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43200553-43204142:+
Coord C1 exon
chr19:43200553-43200659
Coord A exon
NA
Coord C2 exon
chr19:43204010-43204142
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
ATTGGTGTTTTCCTAAGCAGAAG
3' ss Score
5
Exon sequences
Seq C1 exon
GTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTG
Seq A exon
NA
Seq C2 exon
AAGAAACCTGCTCGGCGGCGGTACGACACGTATGGGATGTATTCAGATGATGATGCTAATAGCGACGCCTCTAGCGCGTGTTCTGAGCGCTCGTACAGCTCCAGAAATGGCAGCATCCCAACGTATATGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-35-38,35-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.930 A=NA C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(17.0=47.0),PF046827=Herpes_BTRF1=PU(19.8=21.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGAGTCTTGAACACCGG
R:
CATCCCATACGTGTCGTACCG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]