DreALTA0007985-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43200553-43204142:+
Coord C1 exon
chr19:43200553-43200659
Coord A exon
chr19:43204007-43204009
Coord C2 exon
chr19:43204010-43204142
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
TCCATTGGTGTTTTCCTAAGCAG
3' ss Score
3.26
Exon sequences
Seq C1 exon
GTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTG
Seq A exon
CAG
Seq C2 exon
AAGAAACCTGCTCGGCGGCGGTACGACACGTATGGGATGTATTCAGATGATGATGCTAATAGCGACGCCTCTAGCGCGTGTTCTGAGCGCTCGTACAGCTCCAGAAATGGCAGCATCCCAACGTATATGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-35-38,35-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.930 A=NA C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(17.0=47.0),PF046827=Herpes_BTRF1=PU(19.8=21.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGAGTCTTGAACACCGG
R:
CATCCCATACGTGTCGTACCG
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]