DreEX0021947 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43200553-43204254:+
Coord C1 exon
chr19:43200553-43200659
Coord A exon
chr19:43203859-43203882
Coord C2 exon
chr19:43204010-43204254
Length
24 bp
Sequences
Splice sites
3' ss Seq
GGCTTTGTCAATGCTGCCAGCTA
3' ss Score
2.69
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GTTCTGGGTTGGGTATGTCTCAGTCCAGTCGTCTGTCATCTTCAGTTAGTGCCATGAGAGTCTTGAACACCGGATCTGACGTGGAGGAAGCCCTGGCAGATGCTCTG
Seq A exon
CTATTAGGAGATATGCGGAGCAAG
Seq C2 exon
AAGAAACCTGCTCGGCGGCGGTACGACACGTATGGGATGTATTCAGATGATGATGCTAATAGCGACGCCTCTAGCGCGTGTTCTGAGCGCTCGTACAGCTCCAGAAATGGCAGCATCCCAACGTATATGCGGCAGACGGAGGACGTGGCTGAAGTGCTCAATCGCTGTGCCTCCGCCAACTGGTCCGAGAGGAAAGAGGGGCTGATGGGATTGCAGGCGTTGCTGAAAAACCATCGAACTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.930 A=0.970 C2=0.652
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(17.0=47.0),PF046827=Herpes_BTRF1=PU(19.8=21.7)
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACACCGGATCTGACGTG
R:
GAGGCGTCGCTATTAGCATCA
Band lengths:
116-140
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]