Special

HsaEX0015498 @ hg19

Exon Skipping

Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33614602-33617767:-
Coord C1 exon
chr3:33617661-33617767
Coord A exon
chr3:33615965-33615988
Coord C2 exon
chr3:33614602-33614846
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAAAAATTTACTGCTCTCAGCTC
3' ss Score
4.18
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTCCAGGTTATGGGATCAGCCAATCAAGTCGACTGTCGTCTTCTGTTAGTGCCATGCGAGTCCTGAACACAGGTTCTGATGTGGAGGAGGCGGTGGCAGATGCCTTG
Seq A exon
CTCTTAGGAGACATACGGACTAAG
Seq C2 exon
AAAAAACCAGCTCGAAGAAGATATGAATCATATGGAATGCATTCAGATGATGACGCCAACAGCGATGCATCTAGTGCTTGTTCAGAACGCTCCTATAGTTCTCGAAATGGTAGTATTCCTACATATATGAGGCAGACGGAAGATGTGGCAGAAGTCCTCAATAGATGTGCTAGTTCCAATTGGTCAGAAAGGAAAGAAGGCCTCCTAGGTCTGCAGAACTTATTAAAAAATCAGAGAACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.981 A=0.875 C2=0.795
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(17.2=47.6),PF116403=TAN=PU(50.7=46.3)


Main Inclusion Isoform:


Main Skipping Isoform:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGATGTGGAGGAGGC
R:
ACTAGATGCATCGCTGTTGGC
Band lengths:
112-136
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion enhances interaction with MAPRE3. By LUMIER.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development