BtaEX0009136 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7855579-7858924:-
Coord C1 exon
chr22:7858818-7858924
Coord A exon
chr22:7857137-7857160
Coord C2 exon
chr22:7855579-7855823
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAAAAATCTACTGCTCTCAGCTC
3' ss Score
3.78
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTCCGGGGTATGGGATCAGCCAATCAAGCCGACTGTCATCCTCGGTCAGTGCCATGCGAGTCCTGAACACAGGTTCCGACGTGGAGGAGGCAGTGGCAGATGCCTTG
Seq A exon
CTCTTAGGAGACATACGGACTAAG
Seq C2 exon
AAAAAACCTGCTCGAAGAAGATACGAATCTTACGGGATGCACTCAGATGATGATGCGAACAGCGATGCATCCAGTGCTTGTTCGGAACGCTCCTACAGCTCTCGGAACGGTAGTATTCCCACATACATGAGGCAGACAGAAGACGTGGCAGAAGTCCTCAACAGATGTGCCAGCTCCAACTGGTCAGAAAGGAAGGAAGGCCTCCTGGGTCTGCAGAACTTACTAAAAAACCAGAGAACGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_MULTIEX1-11/14=10-12
Average complexity
S
Mappability confidence:
75%=82=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015071fB1745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGAGTCCTGAACACAG
R:
CATCATCTGAGTGCATCCCGT
Band lengths:
108-132
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development