GgaEX0017985 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45283673-45286872:-
Coord C1 exon
chr2:45286766-45286872
Coord A exon
chr2:45284367-45284390
Coord C2 exon
chr2:45283673-45283917
Length
24 bp
Sequences
Splice sites
3' ss Seq
CAATAATTTACTGCTATCAGCTC
3' ss Score
1.61
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
Seq A exon
CTCTTAGGAGACATACGGACTAAG
Seq C2 exon
AAGAAGCCTGTGCGAAGAAGATACGAGTCTTACGGGATGTACTCAGATGATGATGCCAACAGTGATGCATCAAGTGCCTGTTCAGAAAGGTCCTACAGCTCTAGGAACGGAAGCATACCGACATATATGAGACAGACAGAAGATGTGGCTGAAGTCCTAAATCGCTGTGCTAGCTCCAACTGGTCAGAGAGAAAAGAAGGCCTTCTGGGCCTGCAAAATTTATTAAAGAACCAGAGAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(17.2=47.6)
Main Inclusion Isoform:
ENSGALT00000019569fB2116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCTCGTCAGTTAGCGC
R:
TCGTATCTTCTTCGCACAGGC
Band lengths:
102-126
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]