GgaINT0099685 @ galGal4
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45283673-45286872:-
Coord C1 exon
chr2:45286766-45286872
Coord A exon
chr2:45283918-45286765
Coord C2 exon
chr2:45283673-45283917
Length
2848 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GACGTGTTTCTGAACAATAGAAG
3' ss Score
3.27
Exon sequences
Seq C1 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
Seq A exon
GTAAGACTCTCGTGCCTGTGTTGTGGAGCATGCAAACTGCTAAAATGTTTAGTGTTTGTACACTGAAATGTGTAAAAGGACTTGTCCTTCCATGTCTTACTGACTTGTAGGTGTGAAAAAAAGAGAAATCGAATTATTTTAGCTGCAAAGCATGGGAATTTTTGTTCCATATGGAAGTCTTAACTTTAGAGAAATGTTTGTTTTCCATGGCAGGCAGGATATAGTCTTGGGCTGTTCTGTTGGAGTAGCTGTAGGAGCCTCTTGAGCAGAAGGCACTTAGGAGCAGTATTCCACAACAGCTACACAAACTTCTAGATAGATTGAGCTTGGTAGGATTCTAAGAGCAGAGATGATAAGATCTAAGGCACACTTAAAGTTGTTTTGACAACGCGCAAGGTTAATGCTGAAGAGATAAACTGATGGTTTGACAGGCAGCATTTAGTAAGTTTGGTTTTTATTTTTAAAATGTTACACTGATTTGCCAGCTTGTTATGCTGTTCTTGGTCTGAACCGTACTGTTCTTTAAAGGGGTCTTTTTGGCTTCCTCTCCATTGTGCCCCAATTAGCCAAACTGAAAGCATATGTCATGTGTTTTGTTGTTCTGCCATCGGTCTCAGCAAAGTGAAATCTTCAAATAATTTAAAATACTGGTATTGTGAGTTTTCAACATTTTTATCATGTATTTGCATATAAAATTTGCGTAACATTATTTATATATAAAATACCTGTTGCATAAATAATAGAACTCTTTAAGAGGTTTGTTGGTATTTTTTTAACAACAACAACAAAAAAAAGTTCTAGAATCATAGATAAATTTGCATTGGAAAGGATCTGAAATATCATCTCGTTTCAGAGAGGGAAACAAAATTTTAAAGGAAAAAGAATCTGAAGAGCTCTATCATGTGTGTATAGTCTTGCCAGTTTATTGACTTCTTGGTTAATACTGTTTTCATGATAAATTTACCATTTTTGATAGTGTGAACTTGCAAAAAGTTTTGGGTAGAAATCTGGAATTCTGGTTGGCAAACTGGAACTCAGTCTGCATTGTGGATTTTTATAAGGTAGAATAGAGAGAAATAGCACATGGGACTTTAGAAGTTTCCGTCTATAATGAGAAAACCCACAATGCTGCTATGTAATGTGCATCTTTTAGCAGTTTCATAGCTTATTCTAATTTATCTTGGTTACAAATGTAGTGGGAAATGCATAATAAACTGAGGAGAAACTCTTGCTTCTAATGACTGTTATTGAGACTTGAATGTTCTCTGCTTAGTTGAAGCAATTCAGTTTGTTCATAGAAACTCGTTTGTATTACCTAAATGCAGAATAGCACAATGTTTCTATAAGTGCTAGAGAAAAATTAATTTGTATATTTTAGCTATAATCTATACAACTAGGAAGGATAGAGAAGAGCAGCATTAGAGTAATACAGTATTAGTAGGACTGCTTGCATCCCATGCATTTAGATGGATCTGGTTATGAGTGTTCTTTGTTTTCTTTTATCACAGAATAAAGGCCCTTGTCAGAATTGTGTTTTTAAAAGGCAGAACAGTAACATCCTGACAGACATAATCCATAATATTTGATTTTCACATTACTTTGTTGTTAATGTTATTTTATCTCTTCCTTTATTCTCTTACATGGATATGCGTACATGTATTGTTGTCAGTGAGCTTGCTTGTTACGTGATGTATTTAAATAACATTAAAGCTATTCAGCAAGCAAAAATGAAAGCCCTGTGTAAACTGCAGTCGTAATTAAAGGGAGAACAATCACTTCTGCTTATTTGAATGTGTAATGAAACTGGGTTTTTAACTACTCGGTTCAGCTCGTGTTTGAATGGCAGAGTTACTTTGCAGCAGCTTGTGTTTGGCCTTTTAGGATAAACAGTGCATTTTTCCTCTGGCCTTTGTTATGTTGTGTTTTGTTTTGTTGGCTTGCTTTTGTTTTTTAATGTATTTGGGATTCTGCAGTAGGACATTTTCCAGATTTACTTCTCTACTGATTGTTGCAATTAGAACATTTGAATATTTTAGATTCCAAAATGCTGCTAATCAGAACGAGATTGAGAAGCATGTGGAAAAATGAAGTTTAAATGAGGCTTCCATACTTTAATAGCATAAGAGACAAAGATTTCGACCAAGTAGCCTTTGTGAACATCCAGAAGGTGACATCATGTAATGTGTCTGTGGAAATGGAAGTTTGGCAAACTTCTTATTGGTAATGCATGATACGCTGATCAGATAGAGAGAACTGAGTCAAATTTGCAAAAGATTGTGTTTTCCAATGACAGGTACTTTAGTAGTCACAGTGCTGCTATGCCTTACCTTGCTGTTCTCAATTTCTGTTTCTTTTCAATAATTTACTGCTATCAGCTCTTAGGAGACATACGGACTAAGGTATAGAAATTATTTTCCTTACTCAGTAGTTTAATATTTTGATATTAACATGTTTGATGCAAAGTAAGTTAAAATGAAAGAATATGTTTTTAGACCTGATTCTTATATTCTTTAACAAGTATAAAGTTAAGTGAAATAACTAACTTTCAGTGCAATCTGTCATCCTATCACGCAATTTTATGAATTTTTACAAGTAAATTTAAGCTGAACGTTTCATCAAACGTATGTCTTCTTTCCATTTGCTTTGCTTATATATTTGGAATCCTATGCAAGCCATACATCTTTAAAATCTTTTTATTAACTTGCTTTGAACTGCTGAACAGTTAGAGCCATTTGTCAGTGCAAGGAGTAGGGCTTGCATCACTTCTTGGAAATGTTGGTGTTTCTACTGATAATGGATAATATTTCTTTGTAAATCGCTATTAACGTGACGTGTTTCTGAACAATAG
Seq C2 exon
AAGAAGCCTGTGCGAAGAAGATACGAGTCTTACGGGATGTACTCAGATGATGATGCCAACAGTGATGCATCAAGTGCCTGTTCAGAAAGGTCCTACAGCTCTAGGAACGGAAGCATACCGACATATATGAGACAGACAGAAGATGTGGCTGAAGTCCTAAATCGCTGTGCTAGCTCCAACTGGTCAGAGAGAAAAGAAGGCCTTCTGGGCCTGCAAAATTTATTAAAGAACCAGAGAACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.659
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123483=CLASP_N=PU(17.2=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]