HsaINT1007757 @ hg38
Intron Retention
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33573110-33574496:-
Coord C1 exon
chr3:33574473-33574496
Coord A exon
chr3:33573355-33574472
Coord C2 exon
chr3:33573110-33573354
Length
1118 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
AGATTCTTGATGTATAACAGAAA
3' ss Score
3.93
Exon sequences
Seq C1 exon
CTCTTAGGAGACATACGGACTAAG
Seq A exon
GTATAGACATTGCTATTTTCTGACATCTTATGATACCATAACTTTTTTTTCTTTCATCAATTTAACAAATGATGGTCTTCTATTAAAAATCAAAGTAGAAGTAAAATCCTTAGACATACATCTATTTTTCTGTAAATATGGTTATCGAGAGAGATACTGCTTGAATAATGTCCTCTGGAGGTGCTCATTCTTTCAGCTTGACTACTTCATACAAATTAAATGAGGTCATTCACACTGAATTATTGTGTTTAATCTGTTTTATAGACATCTTCACCACTCATCAGCCAAAATTCAAGTATCAGATAACATAAAGATTTGTTTTCAGCTCTTTTAAGGAAATCTTAAATAAACTATTCTTTCTCATTTCACTTGAAATATGCAAGGTATAACTGGCATTTACATATATTAAACAAATAAGATTTAGATGTAAAGAAATCAAAGGAATCTGAATATGCTTTCTTATATTTATTGAATTAAACAATATAGATACATTGAGAAAAGCATAGAGGGCTCTCAAGGAGTTCGCCTCCTTAAAATAATAGTAGACTAAATAGTTTTTCATCATTCTTTGTATTTTATTTCTCTAGGAGACATGAGGGTTGGGTACAAGGGAAGGAATAGTGGCAAGAGAAGTGGTAATGGAGGTAAAAGGAGAATAAAGAAAAGATAGACAGAAAAAAATGGAACTTTATACATGGAAAATGTTTTTCTGATCCATTATACTCTTTCTTTAAAAAGGTAATATTTTCTTCTTACCAACTCAAATTTCTAGTATAGTTTCTGTTCATTTACATTCTAGTAGTTCTTGGTTTTTCGTGAAAAGGGGAAAGGAAAAACCCACATTTTTTAGCGCTTCCCACTTTACATATCTGAACTTCCATATAGTCTTACTCTGCTTCTACCACTTCCCATAGTTAAGGATTATTTTACCTTCTACTAACTTCTAAAACTTGTTTTCTGAAGAAAAACTAAATACTGACATTCTGTTATTACAATGATTAGGAGCATGCTTTGCACTGATTTTAAAACAAAAATCAATCCTTTTGTGGTCAGTAGAAATTATGAAATACCAATATATTCTTTTGGCTACTGCTAATGAGATTCTTGATGTATAACAG
Seq C2 exon
AAAAAACCAGCTCGAAGAAGATATGAATCATATGGAATGCATTCAGATGATGACGCCAACAGCGATGCATCTAGTGCTTGTTCAGAACGCTCCTATAGTTCTCGAAATGGTAGTATTCCTACATATATGAGGCAGACGGAAGATGTGGCAGAAGTCCTCAATAGATGTGCTAGTTCCAATTGGTCAGAAAGGAAAGAAGGCCTCCTAGGTCTGCAGAACTTATTAAAAAATCAGAGAACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539:ENST00000468888:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.958 A=NA C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTAGGAGACATACGGACTAAG
R:
TAAGTTCTGCAGACCTAGGAGGC
Band lengths:
246-1364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains