BtaINT0038884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7855579-7858924:-
Coord C1 exon
chr22:7858818-7858924
Coord A exon
chr22:7855824-7858817
Coord C2 exon
chr22:7855579-7855823
Length
2994 bp
Sequences
Splice sites
5' ss Seq
TTGGTACTC
5' ss Score
1.28
3' ss Seq
AGAGTCTTTACGTATAACAGAAA
3' ss Score
2.05
Exon sequences
Seq C1 exon
GTCCGGGGTATGGGATCAGCCAATCAAGCCGACTGTCATCCTCGGTCAGTGCCATGCGAGTCCTGAACACAGGTTCCGACGTGGAGGAGGCAGTGGCAGATGCCTTG
Seq A exon
GTACTCTTGTCCATTTCCTTATCACTATAGATGTTCCAGTTAATGAAACTAATATATGAGTGAGCCAGTCCACGAGTGTGGGAAAGGAGATGGAAGATTCTTGTGGATTAAATCTAGGAAGATCAAATGTGGCAGTATAAAAAGCAAAACAGTATAATTTATTGTTGATCTTTATTAATTGGTCAGGTTTTTAAGCCAAGGCCCACGATGGAATGTCAGAAATATAAATACTGGTATTGTTAATACAGTGTTTTTATGCACTGTAGTACACTGAAAATAAAGGCAGACAGATGAGTATGTAAATATGTACACTGCAAGTGTATAATTTCAAAGCTAGCTCAACCTTGAGTAGTTAGGGGTTGTTTTCGTTTGGAGTAAAGTTTGTATAGTCTTTTACTTATTTGTATTTTCTGAGCTGAGAGAAAGTACAATTTCAAAACAAATTATATTTAAGATATCTTTCTAGTTCTTTAAACCTGAAACATTAAACAGTGAGGCTTCAAAATATCACCTACAGATCCGTGATGGTTTTGTCAGAAGAGTGACGTACAGATATCACTGTAGTTTTTCCTCCCCATGAAATTATGAAGGAAGTACTTGAGACAGTGATTATGATTGGCTTTTGCCTTTTTCCCTCATCAATTCAGTATGACAGTTTCTCTTAAATTATGACATTAATCCTATTTTTGAGAAGCATCTACTCATTTTCTTACACAGAACTTAACAAAGGTGTCATGTTTGTTTTAAAATAAGAAAGTACATTGTGCCTTTTAAACCTGCATGCCACCTCTTAACCATTGCCGATACGCCATGTGCCACATATATTTGAAAAGCAAGTTTTTAAAAATATTCATCGGTCATAGCTATAGCATATTAAATGTAATCACATGTGAGGTTCTGCCCTGTGCTGAATTTTTTTCTTTACCTCAGCCACCTGATATTTTTTCATAAAAATACTTACTAAATATGAACTTTGTTCTCTTGAGCTTGGGATATATTAATCACATCTTATTCTGATGGTATTAAATTAGTCATATGTTTTAAATTTATTCTTCCTGATCAGTGTATTTCTCAAATCACATTTTCTAGTTTCCTCTATGTGAAGGATTTACTAGTTAAATTCTATTCATACAAATTTTATGAATTGATTGGACTACTCTTGAATAATCTTTATCCTATTATTTATAATAAGATGTATTTGGTTTATATGAGGAATATTTAGCCATCAGTGCTAAAAACCAAATCCCAATAATTTGTGTCTACTTCCATTATTTGCATAGCATAGATATTCCAATTATAACTATCAATTTTTAGGAAAAGACTATTTAACTATTAAGCCTGGTTGGACCTAGGGAAAATCATAGAAATAAAATTAAGTTTTAGGAATGACAAAAAGATACAAATAGGAAGAAGACTTGAGTTTTTTGGGGAAATTGGTTATGTGAATATTTCTGTAACTTACATATTTTTCTTTGGACTAAAGGATATTGACAAGATTAAAGATATAACCTGCTAATAAGCAGTTCTTATGTATCTAAATATTTAAAAGCTTAATGGTTCTGATTATGGGCATTGTTTATGCCTACTTCACTGTGCTGTTTAGCAAAATGTTCTTCATTATTTTCAATTTTTCTCTTTAAAAATCTACTGCTCTCAGCTCTTAGGAGACATACGGACTAAGGTATAGACATTGCTATTTTCTGACATCTTATGGTACCATAACGTTTTTTTCTTGCCTTCATCAGTTTAACAGATGATAGTCTTCTATAAAAAATTCAAGTGGAAGTAATAAAATCTTTAGACATACATCACCTTTCTGTACATATGATTATATGATTATCAGTAGGGAGATAGTACTTAAATAGTGTCCTGTGGGGGTTTTCATCCTTTGAGCCTGACTACTTTGCACAAATGCGATGATGTCATTGACGCTATGTCTATAACAAAACTTGGAGCCTAAAACAAAAGTATCATGTTTTTGCCATTCTAAATTGTTGGTGCCTCCAAATCAAATCAATTTAGTGATGGAAAGTCAATGAAAAACTATTTTTAATTAAGTTCAGGTTATATTTCTTTTAGATTTTAAACTTGAATAATTTAAGTCACCCAGAGCTATGTAAAATTATTGTTCTTCAGTGTTTCATAGAAACATCTTCATCTCTCACCAGCCTGAATTCACATATCAGATTACATAAAGACTTAATTCTGATTCTCTCAGGGAAATCTCAAATAATCTATTCCGTCTCATTTCACTTTTAATATTCAAGGTAAAATTAGCAGTTTTATAACTTCAGATGTGAAGAAATCAAAGTAATACTTTTTTATATATATTGAAATAGATAGTTTAGACACATTAGGGAAAGCATGGAGAACCCTTCAGGAGCTTGCTTCCTAAAAGTAAGAGTAAGCTAAACGGGCTGTCATCATTCTTTGTGGTTTTCTTCTCAAAGAAACATCAGGGATGGGTACAAGTGAAGGAAGAGCGGCAGAGAAATGATAATGGAAGTGAAAGAAGAATAGAGGAAAAGGGAGGTAGAGAGACAGAAAAAATAGAACTTTACACAGGAAACAGGTTTTTCTCGTCCATTCTCATCCTTTAAAAAGGTTATAATTTCTTTGTAACAACTCAGAGTTTTAGCACAGAGCCTGTTCATTTACACTCTGGTAGTAGTTCTTGGTTTTCCACAAAAAGAAAAAAGAAAAGGAAAAACCTCATGTTTTTAGCACTCCCCACTTTATGTATCTGACTTCCATATAGTAGTTTTATTCTGCTTCTACCACTCCCCATAGTTAAAGAATATTTCATCTCCTACTAACTCCTAAAACATGTTTTCTGAAAAAAACTAAAATTTCAACATTTTATTATTACAATGATTAGCAGCATGCTTTACACTGATTTTTAAACAAAGGCCAGTCCTTTTCTGGTCAGTAGAAATCGTGAAATACCGGCATGTTATTTTAGCTACCACTAATGAGAGTCTTTACGTATAACAG
Seq C2 exon
AAAAAACCTGCTCGAAGAAGATACGAATCTTACGGGATGCACTCAGATGATGATGCGAACAGCGATGCATCCAGTGCTTGTTCGGAACGCTCCTACAGCTCTCGGAACGGTAGTATTCCCACATACATGAGGCAGACAGAAGACGTGGCAGAAGTCCTCAACAGATGTGCCAGCTCCAACTGGTCAGAAAGGAAGGAAGGCCTCCTGGGTCTGCAGAACTTACTAAAAAACCAGAGAACGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333:ENSBTAT00000015071:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]