GgaINT0099685 @ galGal3
Intron Retention
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44732045-44734550:-
Coord C1 exon
chr2:44734444-44734550
Coord A exon
chr2:44732069-44734443
Coord C2 exon
chr2:44732045-44732068
Length
2375 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CAATAATTTACTGCTATCAGCTC
3' ss Score
1.61
Exon sequences
Seq C1 exon
GTACCAGCTTTGGAATTAGTCAGTCGAGTAGATTGTCCTCGTCAGTTAGCGCTATGAGAGTTCTGAACACGGGTTCTGATGTGGAAGAGGCAGTAGCAGATGCTTTG
Seq A exon
GTAAGACTCTCGTGCCTGTGTTGTGGAGCATGCAAACTGCTAAAATGTTTAGTGTTTGTACACTGAAATGTGTAAAAGGACTTGTCCTTCCATGTCTTACTGACTTGTAGGTGTGAAAAAAAGAGAAATCGAATTATTTTAGCTGCAAAGCATGGGAATTTTTGTTCCATATGGAAGTCTTAACTTTAGAGAAATGTTTGTTTTCCATGGCAGGCAGGATATAGTCTTGGGCTGTTCTGTTGGAGTAGCTGTAGGAGCCTCTTGAGCAGAAGGCACTTAGGAGCAGTATTCCACAACAGCTACACAAACTTCTAGATAGATTGAGCTTGGTAGGATTCTAAGAGCAGAGATGATAAGATCTAAGGCACACTTAAAGTTGTTTTGACAACGCGCAAGGTTAATGCTGAAGAGATAAACTGATGGTTTGACAGGCAGCATTTAGTAAGTTTGGTTTTTATTTTTAAAATGTTACACTGATTTGCCAGCTTGTTATGCTGTTCTTGGTCTGAACCGTACTGTTCTTTAAAGGGGTCTTTTTGGCTTCCTCTCCATTGTGCCCCAATTAGCCAAACTGAAAGCATATGTCATGTGTTTTGTTGTTCTGCCATCGGTCTCAGCAAAGTGAAATCTTCAAATAATTTAAAATACTGGTATTGTGAGTTTTCAACATTTTTATCATGTATTTGCATATAAAATTTGCGTAACATTATTTATATATAAAATACCTGTTGCATAAATAATAGAACTCTTTAAGAGGTTTGTTGGTATTTTTTTAACAACAACAACAAAAAAAAGTTCTAGAATCATAGATAAATTTGCATTGGAAAGGATCTGAAATATCATCTCGTTTCAGAGAGGGAAACAAAATTTTAAAGGAAAAAGAATCTGAAGAGCTCTATCATGTGTGTATAGTCTTGCCAGTTTATTGACTTCTTGGTTAATACTGTTTTCATGATAAATTTACCATTTTTGATAGTGTGAACTTGCAAAAAGTTTTGGGTAGAAATCTGGAATTCTGGTTGGCAAACTGGAACTCAGTCTGCATTGTGGATTTTTATAAGGTAGAATAGAGAGAAATAGCACATGGGACTTTAGAAGTTTCCGTCTATAATGAGAAAACCCACAATGCTGCTATGTAATGTGCATCTTTTAGCAGTTTCATAGCTTATTCTAATTTATCTTGGTTACAAATGTAGTGGGAAATGCATAATAAACTGAGGAGAAACTCTTGCTTCTAATGACTGTTATTGAGACTTGAATGTTCTCTGCTTAGTTGAAGCAATTCAGTTTGTTCATAGAAACTCGTTTGTATTACCTAAATGCAGAATAGCACAATGTTTCTATAAGTGCTAGAGAAAAATTAATTTGTATATTTTAGCTATAATCTATACAACTAGGAAGGATAGAGAAGAGCAGCATTAGAGTAATACAGTATTAGTAGGACTGCTTGCATCCCATGCATTTAGATGGATCTGGTTATGAGTGTTCTTTGTTTTCTTTTATCACAGAATAAAGGCCCTTGTCAGAATTGTGTTTTTAAAAGGCAGAACAGTAACATCCTGACAGACATAATCCATAATATTTGATTTTCACATTACTTTGTTGTTAATGTTATTTTATCTCTTCCTTTATTCTCTTACATGGATATGCGTACATGTATTGTTGTCAGTGAGCTTGCTTGTTACGTGATGTATTTAAATAACATTAAAGCTATTCAGCAAGCAAAAATGAAAGCCCTGTGTAAACTGCAGTCGTAATTAAAGGGAGAACAATCACTTCTGCTTATTTGAATGTGTAATGAAACTGGGTTTTTAACTACTCGGTTCAGCTCGTGTTTGAATGGCAGAGTTACTTTGCAGCAGCTTGTGTTTGGCCTTTTAGGATAAACAGTGCATTTTTCCTCTGGCCTTTGTTATGTTGTGTTTTGTTTTGTTGGCTTGCTTTTGTTTTTTAATGTATTTGGGATTCTGCAGTAGGACATTTTCCAGATTTACTTCTCTACTGATTGTTGCAATTAGAACATTTGAATATTTTAGATTCCAAAATGCTGCTAATCAGAACGAGATTGAGAAGCATGTGGAAAAATGAAGTTTAAATGAGGCTTCCATACTTTAATAGCATAAGAGACAAAGATTTCGACCAAGTAGCCTTTGTGAACATCCAGAAGGTGACATCATGTAATGTGTCTGTGGAAATGGAAGTTTGGCAAACTTCTTATTGGTAATGCATGATACGCTGATCAGATAGAGAGAACTGAGTCAAATTTGCAAAAGATTGTGTTTTCCAATGACAGGTACTTTAGTAGTCACAGTGCTGCTATGCCTTACCTTGCTGTTCTCAATTTCTGTTTCTTTTCAATAATTTACTGCTATCAG
Seq C2 exon
CTCTTAGGAGACATACGGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995:ENSGALT00000019569:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]