RnoEX0021487 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122136996-122140626:+
Coord C1 exon
chr8:122136996-122137102
Coord A exon
chr8:122139290-122139313
Coord C2 exon
chr8:122140382-122140626
Length
24 bp
Sequences
Splice sites
3' ss Seq
TAAAAATTGACTGCTCTCAGCTC
3' ss Score
3.88
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
GTCCAGGATATGGGATGAGCCAGTCAAGCCGGTTGTCATCCTCTGTCAGTGCCATGCGGGTCCTAAACACAGGCTCCGATGTGGAAGAGGCGGTAGCTGATGCCTTG
Seq A exon
CTCTTAGGAGACATACGGACTAAG
Seq C2 exon
AAAAAACCTGCTCGAAGACGGTATGAATCATACGGAATGCACTCAGATGACGATGCCAACAGCGATGCTTCTAGTGCGTGTTCAGAACGCTCCTATAGCTCTCGAAATGGTAGTATTCCTACCTACATGAGACAGACAGAAGACGTGGCAGAAGTCCTCAACAGATGTGCTAGTTCCAATTGGTCAGAGAGGAAAGAAGGCCTCTTGGGTCTACAGAACTTGTTAAAAAACCAGAGAACACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'46-48,'46-47,51-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF123483=CLASP_N=PU(17.2=47.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGGGTCCTAAACACAGG
R:
TTGGCATCGTCATCTGAGTGC
Band lengths:
114-138
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]