GgaALTA0006323-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45260415-45265225:-
Coord C1 exon
chr2:45265003-45265225
Coord A exon
chr2:45260576-45260581
Coord C2 exon
chr2:45260415-45260575
Length
6 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
CATGGATCATTCTGATCTAGTTG
3' ss Score
4.83
Exon sequences
Seq C1 exon
ATTGGCAGTGCTTCTGGAATAGCAGACCTACGAGCAGGAAGTGGTATAAGTGATACAGGCCGAACAGCTCTTGATAACAAAACATCATTACTCAACACAATGCCTCCTCACTCTTCACCACGCTCACGAGATTATAACCCATACAATTATTCTGATAGTTCGTTTAATAAATCTGCTTTGAAGGAAGCCATGTTTGATGATGATGCAGAGCAGTTTCCTGATG
Seq A exon
TTGCAG
Seq C2 exon
AGTTACTAAAAGAGTTATCAAACCATAACGAGAGAGTCGAGGAGAGAAAGGCTGCCCTGTATGAGCTCATGAAGTTAACTCAAGAAGAGTCTTTTGGTGTTTGGGATGAGCACTTCAAAACAATACTGCTTTTGCTGCTTGAAACACTTGGAGACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-80-98,80-97,80-96-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGAGCAGTTTCCTGA
R:
CATGAGCTCATACAGGGCAGC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]