GgaEX0017987 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45258589-45283043:-
Coord C1 exon
chr2:45282980-45283043
Coord A exon
chr2:45276570-45276620
Coord C2 exon
chr2:45258589-45258795
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTAAACTTTCAGACA
3' ss Score
7.39
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
Exon sequences
Seq C1 exon
TCGTGTTGAGTTGAAAAGGCTGTGTGAAATCTTCACAAGAATGTTTGCTGATCCTCACAGTAAG
Seq A exon
ACAGTCAAGCCAGCACTACAGGACCAGCTTCGCTCTTTTTGGAGCTCAAAG
Seq C2 exon
GTGGTGAGATCTGCTGAAGAAGCTGCTTCCATGCTGGCCATTTCCATTAGCCCAGATCAGTGCATCAAAGTCCTTTGTCCAATTATCCAGACTGCAGACTACCCCATTAATCTGGCTGCAATCAAAATGCAGACAAAAGTCATAGAGAGAGTATCTAAAGAAACTCTTACTCAGCTTTTACCGGAGATTGTGCCAGGTTTAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_MULTIEX2-3/11=C1-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.588 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF102744=ParcG=PU(50.5=81.2)
Main Inclusion Isoform:
ENSGALT00000019569fB2117
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTGAGTTGAAAAGGCTGTG
R:
TTTGATGCACTGATCTGGGCT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]