GgaEX0017987 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44719896-44724536:-
Coord C1 exon
chr2:44724458-44724536
Coord A exon
chr2:44724248-44724298
Coord C2 exon
chr2:44719896-44720039
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTAAACTTTCAGACA
3' ss Score
7.39
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
Exon sequences
Seq C1 exon
GGAATCATTTCCAAATGATCTTCAGTTTAGCATTTTAATGAGATTTACTGTTGACCAGACCCAAACACCTAGTTTGAAG
Seq A exon
ACAGTCAAGCCAGCACTACAGGACCAGCTTCGCTCTTTTTGGAGCTCAAAG
Seq C2 exon
GTAAAAGTTGCAATTCTTAAATACATAGAGACTCTTGCACAACAGATGGATCCAGGGGATTTTGTAAATTCAAGTGAAACTAGGTTAGCAGTGTCTCGAATCATCACCTGGACCACAGAACCTAAAAGCTCAGATGTTAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'54-59,'54-58,55-59
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGACCAGACCCAAACACC
R:
TGTGGTCCAGGTGATGATTCG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]