MmuEX0011518 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113892397-113896785:+
Coord C1 exon
chr9:113892397-113892475
Coord A exon
chr9:113892607-113892657
Coord C2 exon
chr9:113896642-113896785
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTATAAACTTTCAGATA
3' ss Score
8.98
5' ss Seq
AAGGTTTTC
5' ss Score
0.45
Exon sequences
Seq C1 exon
AGAGTCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAG
Seq A exon
ATAGTTGCGCCAGCACTGCGGGACCAGCTTCACTCTTTTTGGAGCTCAAAG
Seq C2 exon
GTAAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAAGAGATTTTACAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACTTGGACGACAGAGCCCAAAAGCTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.005 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.7=100)
Main Inclusion Isoform:
ENSMUST00000214522fB1025
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGACCAGACCCAAACG
R:
TCCAAGTGATGACCCGAGACA
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types