RnoEX0021502 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122153878-122158390:+
Coord C1 exon
chr8:122153878-122153956
Coord A exon
chr8:122154087-122154137
Coord C2 exon
chr8:122158247-122158390
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTATAAACTTTCAGATA
3' ss Score
8.98
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
Exon sequences
Seq C1 exon
GGAATCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAG
Seq A exon
ATAGTCACGCCAGCACTGCGGGACCAGCTTCACTCTTTTTGGAGCTCAAAG
Seq C2 exon
GTGAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACCTGGACGACAGAGCCCAAAAGCTCTGATGTTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.7=100)
Main Inclusion Isoform:
ENSRNOT00000091980fB3156
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGACCAGACCCAAACG
R:
AGGTGATGACCCGAGACACTG
Band lengths:
142-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]