HsaEX0015497 @ hg19
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:17078]
Coordinates
chr3:33592744-33600877:-
Coord C1 exon
chr3:33600799-33600877
Coord A exon
chr3:33600617-33600667
Coord C2 exon
chr3:33592744-33592887
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTATAAACTTTCAGACA
3' ss Score
7.52
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
Exon sequences
Seq C1 exon
AGAGTCTTTTCCAAATGATCTTCAGTTCAATATTCTAATGAGATTTACAGTTGATCAGACCCAGACACCAAGCTTAAAG
Seq A exon
ACAGTCAAGCCAGCACTTCGGGACCAGCTTCACTCTTTTTGGAGCTCCAAG
Seq C2 exon
GTGAAGGTTGCTATCCTTAAATACATAGAAACTCTGGCCAAACAGATGGATCCAGGAGATTTTATAAATTCCAGTGAAACTCGCCTAGCAGTGTCTCGGGTCATCACTTGGACAACAGAACCCAAAAGTTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACCCAGACACCAAGCT
R:
TCCAAGTGATGACCCGAGACA
Band lengths:
138-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)