BtaEX0009133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7835267-7839783:-
Coord C1 exon
chr22:7839705-7839783
Coord A exon
chr22:7839527-7839577
Coord C2 exon
chr22:7835267-7835410
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTATAAACTTTCAGACA
3' ss Score
7.52
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
Exon sequences
Seq C1 exon
AGAATCTTTTCCAAATGATCTTCAGTTCAATATTCTAATGAGATTTACAGTTGATCAGACCCAAACACCAAGCTTGAAG
Seq A exon
ACAGTCAAGCCAGCACTTCGGGACCAGCTTCACTCTTTTTGGAGCTCCAAG
Seq C2 exon
GTGAAGGTTGCTATCCTCAAATACATAGAAACTCTGGCCAAACAGATGGATCCAGGAGATTTTGTAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACCTGGACAACAGAACCCAAAAGTTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.025 A=0.529 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015071fB1744
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCCAAACACCAAGCTTGA
R:
TGGGTTCTGTTGTCCAGGTGA
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development