MmuEX0011518 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113801515-113805903:+
Coord C1 exon
chr9:113801515-113801593
Coord A exon
chr9:113801725-113801775
Coord C2 exon
chr9:113805760-113805903
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTATAAACTTTCAGATA
3' ss Score
8.98
5' ss Seq
AAGGTTTTC
5' ss Score
0.45
Exon sequences
Seq C1 exon
AGAGTCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAG
Seq A exon
ATAGTTGCGCCAGCACTGCGGGACCAGCTTCACTCTTTTTGGAGCTCAAAG
Seq C2 exon
GTAAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAAGAGATTTTACAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACTTGGACGACAGAGCCCAAAAGCTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.030 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTGACCAGACCCAAACG
R:
TCCAAGTGATGACCCGAGACA
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: