GgaEX0029156 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45277813-45283043:-
Coord C1 exon
chr2:45282980-45283043
Coord A exon
chr2:45280771-45280773
Coord C2 exon
chr2:45277813-45277976
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGAACTCTCTTTAGAGA
3' ss Score
6.02
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCGTGTTGAGTTGAAAAGGCTGTGTGAAATCTTCACAAGAATGTTTGCTGATCCTCACAGTAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGTATGTTTTTGGAGACACTGGTGGACTTCATCCAGGTCCATAAAGAAGATCTGCAGGACTGGCTGTTTGTACTGCTGACCCAGCTATTGAAGAAAATGGGTGCTGATTTGCTTGGGTCTGTACAAGCAAAAGTTCAGAAGGCACTTGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100)
Main Inclusion Isoform:
ENSGALT00000019569fB3723
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTGAGTTGAAAAGGCTGTG
R:
TGAAGTCCACCAGTGTCTCCA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]