MmuEX0011521 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113790806-113799239:+
Coord C1 exon
chr9:113790806-113790869
Coord A exon
chr9:113796163-113796165
Coord C2 exon
chr9:113799076-113799239
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGAACTCTCACTAGAGA
3' ss Score
4.66
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTATGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGCATGTTCTTGGAGACTCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAGCTGCTGAAAAAAATGGGTGCTGATTTGCTTGGCTCTGTTCAGGCAAAAGTTCAGAAAGCCCTTGATATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.082 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100),PF116403=TAN=FE(28.0=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100),PF116403=TAN=PD(18.7=25.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGATCCTCATGGCAAG
R:
TGTCAGCAGAACAAACAACCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: