MmuEX0011521 @ mm10
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113881688-113890121:+
Coord C1 exon
chr9:113881688-113881751
Coord A exon
chr9:113887045-113887321
Coord C2 exon
chr9:113889958-113890121
Length
277 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGAACTCTCACTAGAGA
3' ss Score
4.66
5' ss Seq
ATTGTAAGA
5' ss Score
4.37
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTATGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAG
Seq A exon
AGAGTAAGTTGGTTCAATATTTGTTGAAAAGCTAACTTTACTGCATGACTGTGGAATTAACCCATTTTCTCTGTTTTCTCTCCTTAAGAGTCCGTGCAGTGTTGGACCCTTTGCAATCCACGAAATGCTATTCGCAGTTACGCAGGCTGTCATTCTGTTTGGAGATGTGCTTTTAATCTACTAATTGATCTAATTTGATTATGTTCTTCTGTTTCACATTTGATGGCTGGCACACCTAAAATAAAGCAGGCTTCCATGAAAAGAAGCTGCCTCAATT
Seq C2 exon
GTGTTCAGCATGTTCTTGGAGACTCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAGCTGCTGAAAAAAATGGGTGCTGATTTGCTTGGCTCTGTTCAGGCAAAAGTTCAGAAAGCCCTTGATATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=50=50%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.005 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100)
Main Inclusion Isoform:
ENSMUST00000214522fB1026
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTGAACTGAAAAGATTATGTG
R:
CTTGTAATATCAAGGGCTTTCTGAAC
Band lengths:
228-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types