GgaEX0029156 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44725491-44730721:-
Coord C1 exon
chr2:44730658-44730721
Coord A exon
chr2:44728449-44728451
Coord C2 exon
chr2:44725491-44725654
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGAACTCTCTTTAGAGA
3' ss Score
6.02
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCGTGTTGAGTTGAAAAGGCTGTGTGAAATCTTCACAAGAATGTTTGCTGATCCTCACAGTAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGTATGTTTTTGGAGACACTGGTGGACTTCATCCAGGTCCATAAAGAAGATCTGCAGGACTGGCTGTTTGTACTGCTGACCCAGCTATTGAAGAAAATGGGTGCTGATTTGCTTGGGTCTGTACAAGCAAAAGTTCAGAAGGCACTTGATGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.136 A=0.000 C2=0.164
Domain overlap (PFAM):
C1:
PF116403=TAN=FE(27.3=100)
A:
PF116403=TAN=FE(0.1=100)
C2:
PF116403=TAN=PD(19.5=27.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTGAGTTGAAAAGGCTGTG
R:
TGAAGTCCACCAGTGTCTCCA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]