BtaEX0009130 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7841137-7851620:-
Coord C1 exon
chr22:7851557-7851620
Coord A exon
chr22:7846155-7846157
Coord C2 exon
chr22:7841137-7841300
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGGAACTCTCAATAGAGA
3' ss Score
4.82
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTATGTGAAATTTTCACAAGAATGTTTGCTGATCCTCATGGCAAG
Seq A exon
AGA
Seq C2 exon
GTATTCAGCATGTTTTTGGAGACTCTAGTGGACTTCATACAAGTCCACAAAGACGATCTTCAAGATTGGTTGTTTGTACTGCTGACGCAACTACTTAAAAAAATGGGTGCTGATTTGCTTGGGTCTGTTCAAGCAAAAGTTCAGAAAGCCCTCGATGTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-MICROEX3
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGATCCTCATGGCAAG
R:
CGTCAGCAGTACAAACAACCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development