GgaALTA0006554-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012467 | LYPD6B
Description
NA
Coordinates
chr7:36497435-36498767:+
Coord C1 exon
chr7:36497435-36497552
Coord A exon
chr7:36498669-36498687
Coord C2 exon
chr7:36498688-36498767
Length
19 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GTATTTTAATACTTTCAAAGCCA
3' ss Score
3.11
Exon sequences
Seq C1 exon
AGCATGCTGCTGTTCTGTCACACGCTGGTTGGAGCCTTTCTTCCACTCTTCCTCCTTTCAGGGAATTGGGTTTCAGCAAAGAACATTAACTTTTACAATGTGAGACCTCCACTAGACC
Seq A exon
CCACTCCATTTCCAAACAG
Seq C2 exon
TTTTAAGTGCTTTACCTGTGATAATGCGGTGGACAATTACAACTGTAACAGATGGGCTGAAGATCGGTGGTGTCCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012467-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTTTCAGGGAATTGGGT
R:
GTCCACCGCATTATCACAGGT
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]