GgaALTA0006554-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000028759 | LYPD6B
Description
LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
Coordinates
chr7:34369335-34370700:+
Coord C1 exon
chr7:34369335-34369485
Coord A exon
chr7:34370602-34370620
Coord C2 exon
chr7:34370621-34370700
Length
19 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
GTATTTTAATACTTTCAAAGCCA
3' ss Score
3.11
Exon sequences
Seq C1 exon
GCCTCAGACTTTTACTTCTCACGTACCATATTCAGCATGCTGCTGTTCTGTCACACGCTGGTTGGAGCCTTTCTTCCACTCTTCCTCCTTTCAGGGAATTGGGTTTCAGCAAAGAACATTAACTTTTACAATGTGAGACCTCCACTAGACC
Seq A exon
CCACTCCATTTCCAAACAG
Seq C2 exon
TTTTAAGTGCTTTACCTGTGATAATGCGGTGGACAATTACAACTGTAACAGATGGGCTGAAGATCGGTGGTGTCCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028759-20-10,20-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTTTCAGGGAATTGGGT
R:
GTCCACCGCATTATCACAGGT
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]