GgaALTA0006609-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36062039-36063492:-
Coord C1 exon
chr7:36062828-36063492
Coord A exon
chr7:36062313-36062315
Coord C2 exon
chr7:36062039-36062312
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AAAAAATGTTTTCTCTGTAGCAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
TGCAAAAGCCTGGGTCATTTTCAAAACTAAGCAAACTGTTAGAGGTTGCAAAAATGCCACCTGAGTCTGATGTTATGCCCCAAAAACCTAATGGTGGTGCAGCAAATGGATGCACTCCATCTTATCAAAATACTTCCCAAAACTCTCTGTGTAGTCTTCAACCCAGTGTATCACAAAGCAGCAGCGAAAAGTCTGATTCTAGTAATCTTTTCAGTCCTACTGCAAGCGGGACAGGAAAGTTTTATAGTTCTCCATTAATTCCAAGTGATCAGTTATTAAAGACTCTTACTGAGAAGAACAGACAGTGGTTCAGCCTTCTGCCAAGAGTACCCTGTGATGACATGTCAGTTACCCATGTAGATACACCAGCTACTACGTCACTTACTCCTCAATCGCATCCACCATCAAAATCACCATCACCTGTTCCATCACCTCTTCTGGGCTCAACCTCTGCACAGAGTCCAATGGGATTAAGTCCTTTTGCAATGCCACCGCTGCAG
Seq A exon
CAG
Seq C2 exon
ATGAAGCCTGGACTACCTGTCATGGGACTTCAGTTTTGTGGATGGCCTACAGGAGTTCTTACTTCAAATGTTCAGTTTTCATCTCCTTTACCTACTCTTGGATCAGGGTTGGGATTATCAGAAGGGAATGGTAACTCATTCTTGACATCTAGTGTTCCTACAAGTAAAAGTGAATCACCAGCACTGCAGACTGAGAAAGTAGCTTCTGCCACCTGTACAGCAGTGGAAGTGGCCAAGCCAGTAGATCACCCAAACCCAAAACCAATACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-54-55,54-54,54-53-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.570
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(53.0=92.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCACAGAGTCCAATGGGA
R:
ACTCCTGTAGGCCATCCACAA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]