GgaINT0050423 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36062039-36063492:-
Coord C1 exon
chr7:36062828-36063492
Coord A exon
chr7:36062316-36062827
Coord C2 exon
chr7:36062039-36062315
Length
512 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AAAAAATGTTTTCTCTGTAGCAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTTTAGAAGAAATTGCAAAAGAAAAGGAGAAGTTAAAAAAAGTAGAAAGTATACATATCAAAGAAGAGGTATTTGAGATCTCAGAAGAAAAAATAAGCTGTTTAAATACAACTCGCTGTGAGCAAAAGGAAGATCTGAAAGAAAAGGACAACACTAATTTGTTTTTGCAAAAGCCTGGGTCATTTTCAAAACTAAGCAAACTGTTAGAGGTTGCAAAAATGCCACCTGAGTCTGATGTTATGCCCCAAAAACCTAATGGTGGTGCAGCAAATGGATGCACTCCATCTTATCAAAATACTTCCCAAAACTCTCTGTGTAGTCTTCAACCCAGTGTATCACAAAGCAGCAGCGAAAAGTCTGATTCTAGTAATCTTTTCAGTCCTACTGCAAGCGGGACAGGAAAGTTTTATAGTTCTCCATTAATTCCAAGTGATCAGTTATTAAAGACTCTTACTGAGAAGAACAGACAGTGGTTCAGCCTTCTGCCAAGAGTACCCTGTGATGACATGTCAGTTACCCATGTAGATACACCAGCTACTACGTCACTTACTCCTCAATCGCATCCACCATCAAAATCACCATCACCTGTTCCATCACCTCTTCTGGGCTCAACCTCTGCACAGAGTCCAATGGGATTAAGTCCTTTTGCAATGCCACCGCTGCAG
Seq A exon
GTAAATAAATAATTGCTTTAAATAGGTATAAATTTGCAGTGCTTATTTGGCAGAATTTCTTTTGAGCCAAATTGTTTCACAGACGTGGTATTGTATCTTTATGTTTTTATTTTATTCCTTCCTATTTCTAAACATTAGTAGTAGTTCCATGTAAAAGAGACATGGGATTTTTTTTTATTTAGATAAACCAATGTGTGACGTTTTGTATGTTTATTTTAGTAATTAGATTTTGCTTTTAAGGAGTTTGATTATTGTATTATATGAAAAACAGATTTCAGAAATTTGACTGCCCTCAAAAGATACTGTTCCCTAAGCAATCACAAGTTCTAATAGGAATTATTACATTGTTGTTATATGACTTGTTCCTGAACAGCTTGAAGTACTGAGGGAGTAAAGGCATCCTTTATGTTTTGATTGCTGCTTGAAAATTAACATCCTAATGATAACTTTGGTTTCTTGGTAGTACTCAACAATACCAGTTGTGATAGTGTTAAAAAATGTTTTCTCTGTAG
Seq C2 exon
CAGATGAAGCCTGGACTACCTGTCATGGGACTTCAGTTTTGTGGATGGCCTACAGGAGTTCTTACTTCAAATGTTCAGTTTTCATCTCCTTTACCTACTCTTGGATCAGGGTTGGGATTATCAGAAGGGAATGGTAACTCATTCTTGACATCTAGTGTTCCTACAAGTAAAAGTGAATCACCAGCACTGCAGACTGAGAAAGTAGCTTCTGCCACCTGTACAGCAGTGGAAGTGGCCAAGCCAGTAGATCACCCAAACCCAAAACCAATACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.570
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(53.0=92.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGTCCTACTGCAAGCGG
R:
ACTCCTGTAGGCCATCCACAA
Band lengths:
351-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]