DreINT0001856 @ danRer10
Intron Retention
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52407559-52409186:+
Coord C1 exon
chr9:52407559-52407571
Coord A exon
chr9:52407572-52408927
Coord C2 exon
chr9:52408928-52409186
Length
1356 bp
Sequences
Splice sites
5' ss Seq
AAATTTTTG
5' ss Score
-19.38
3' ss Seq
GTTTTCCGCTGTGTTTGCAGAAG
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTATTTTTTAAAA
Seq A exon
TTTTTGTTAGATGAGCTCTAGATTTGGCTTCAGTACTAACTAATGTAATGTATATGCACAAATATAATATAATATTATAAAGAATCCTATAGAAAATAGTCATTTAAATGAGAGATCGATGGGGGGTGTGCTTATATATGCTGAGCACTTTGTGTGTGTGTGTGTATGCGTGCGTGTATGCGTGCGTGCGTGCGTGGGTGCGTGCATGCGTGCGTGGGTGCGTGCATGCGTGCGTGCGTGTGTGCGTGTATATATATAACTTTTTGGATTCTCGGATGCAGTAGAAATAAAAAATGTAAAACAGGAATTACATTGGGACCATTGTTTTTGTTTTTACCCCTTAAAATGGCCCTAAAAATATATATATAGAGAGAGAAAGAGACAGACACACTTTAAAGAACATTACACACACACACACACACACATATATACATACATACATACATTACATACATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATGATGTTTAACAGATTCAGGAAATTTTCACAGTATGTTTGATAATATTTTTTTCTTCAGGAGAAAGTCTTATTTGTTTTATTTTGGCTGGAATAAAAGCTGTTCTTAATTTTTTAAAAGCCATTTTAAGGTCAAATTTATTTGCCTCTTTAAGCAACTTTTTTTCCGATAGTCTACAGAACAAACCATCGTTATACAATAACTTGCCTAATTACCCTATCCTGCCTAATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTCTTCTCTTTTAAATGCTAAAGATTAGTTTTGGGTTGAATGCAGCAAATACAAGCTTCTCAAACAGAAGCTGATTATGGATGACATTTTTATTTATTTTTTTTGCTTTGTGTTTTCCGCTGTGTTTGCAG
Seq C2 exon
AAGTCTGGCATGCCCATATTAGATCTGCCGTTCTGCGCTTGGCCCAATGGAGGTTTGAGACCAAACATGTCGTTCTCTGGGGTCTCCATGGCTCAGATTCTCAGTGGTTGTGGTCTGCTTTCAGAGGACACTAAAAACCTGAGCAATAAAAAGAGTGAAGCTCCTGAATCTCCAACAGAGAAAGCCCTCTCTACACCTTCACCTGTGATCGAGGCGGTGAAAAACCATGATTACCCGTTACCGCAACCCATTCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979:ENSDART00000097149:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]