MmuINT0024156 @ mm9
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59750786-59752252:-
Coord C1 exon
chr2:59751597-59752252
Coord A exon
chr2:59751063-59751596
Coord C2 exon
chr2:59750786-59751062
Length
534 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TGAAATGTTGTGTTTTACAGGTG
3' ss Score
11.21
Exon sequences
Seq C1 exon
GCCTAGAAGAAATTGCAAAAGAAAAAGAAAAGCTTAAAAAGGCAGAGAGTCTCCAGATCAAAGAAGAAGTATTTGAGACTTCTGCGGAGACATTAAACTGTTCCATTAGAGATCACTGCGAGCAGAAAGACGACCCAAAAGAGAAAGATAACACAAATCTATTTCTTCAGAAACCAGGCTCTTTCTCCAAGTTAAGCAAGCTTTTAGAGGTAGCTAAAATGCCTCCTGAGTCAGATGTTATGACCCCCCCAAAAGTGAATGTTAGTACAAACGGGGGCCCACTGTCTCATCAGAACAGCGGGAAGCATCCACTGGGGAGCGTTCCCTCAGCAACAACAGCACAAAGCCCCGTGGGAAAGACAGACGCCAGTCTCTTTAGCTCAGGCTCCGGCAGTTGTGGGAAGTTCTACAGTCCTCTCCCCAATGACCAGCTGTTAAAAACACTGACTGAAAAGAACAGACAGTGGTTTAGCCTTTTGCCAAAAACACCTTGCGATGACACGTCCCTGACCCACGCTGACCTGTCCACCACTCTGGTGACTCCTCAGTCTCAGCCACCATCTAAGTCACCTTCGCCGGCCCCAGCTGCACTGCTCGGACCCTCTTCTGTTCAGAGCCCCCCTGGACTGAACCCGTTTGCTCTGTCGCCTCTTCAG
Seq A exon
GTTAGTGATGCTGACAAAACACACTGTGCCAGCACCTCACTGAACCCTTAGTGATCTTCACAGAGATCAAAGTTAAAATATCCTAACAGGCCTGAAATCCCAAGCAGCCAGGATTTCTGTCACCAAGCTTCATTGGCACCGCTATTGTCTAACCAGTGTCTAGGTTGACCTCAATATTCAGTTCATTACAGTTGCAGGATAGCAAACATGTAATTACTCTTCAGGAACAGATACAACATGAAAGTTAACATTGTTGCTAATGGATTTAGGTTTTCTCTGGTAAAAAGGTAAGAGTTTTAGAATTTGAAAAATAATTTCTAAACATTCCTCCAACTCTTTAGATGAATTGGTATTTGGTTTTTTAAATGTTTTTATTATTATGCAACATTTTTAAATGTTTTGTTATTATGTATCAGAGGGTAACTTGCAGGAGTTGGTTCTTTCCATCATGTGGGCCCCAGGGACATCAGGCCTAGTATTAGGTGCCCTTACCGACAGAACCCTAATCTGGGGTTGAAATGTTGTGTTTTACAG
Seq C2 exon
GTGAAAGGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGAGTGCTCGCTTCCAACGTCCCATTTACATCACCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-Baz2b:NM_001001182:27
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.658 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(53.1=93.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCTCCCCAATGACCAG
R:
GAGAGCAGGCAAAGGTGATGT
Band lengths:
345-879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: