GgaINT0050423 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38198376-38199829:-
Coord C1 exon
chr7:38199165-38199829
Coord A exon
chr7:38198653-38199164
Coord C2 exon
chr7:38198376-38198652
Length
512 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AAAAAATGTTTTCTCTGTAGCAG
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTTTAGAAGAAATTGCAAAAGAAAAGGAGAAGTTAAAAAAAGTAGAAAGTATACATATCAAAGAAGAGGTATTTGAGATCTCAGAAGAAAAAATAAGCTGTTTAAATACAACTCGCTGTGAGCAAAAGGAAGATCTGAAAGAAAAGGACAACACTAATTTGTTTTTGCAAAAGCCTGGGTCATTTTCAAAACTAAGCAAACTGTTAGAGGTTGCAAAAATGCCACCTGAGTCTGATGTTATGCCCCAAAAACCTAATGGTGGTGCAGCAAATGGATGCACTCCATCTTATCAAAATACTTCCCAAAACTCTCTGTGTAGTCTTCAACCCAGTGTATCACAAAGCAGCAGCGAAAAGTCTGATTCTAGTAATCTTTTCAGTCCTACTGCAAGCGGGACAGGAAAGTTTTATAGTTCTCCATTAATTCCAAGTGATCAGTTATTAAAGACTCTTACTGAGAAGAACAGACAGTGGTTCAGCCTTCTGCCAAGAGTACCCTGTGATGACATGTCAGTTACCCATGTAGATACACCAGCTACTACGTCACTTACTCCTCAATCGCATCCACCATCAAAATCACCATCACCTGTTCCATCACCTCTTCTGGGCTCAACCTCTGCACAGAGTCCAATGGGATTAAGTCCTTTTGCAATGCCACCGCTGCAG
Seq A exon
GTAAATAAATAATTGCTTTAAATAGGTATAAATTTGCAGTGCTTATTTGGCAGAATTTCTTTTGAGCCAAATTGTTTCACAGACGTGGTATTGTATCTTTATGTTTTTATTTTATTCCTTCCTATTTCTAAACATTAGTAGTAGTTCCATGTAAAAGAGACATGGGATTTTTTTTTATTTAGATAAACCAATGTGTGACGTTTTGTATGTTTATTTTAGTAATTAGATTTTGCTTTTAAGGAGTTTGATTATTGTATTATATGAAAAACAGATTTCAGAAATTTGACTGCCCTCAAAAGATACTGTTCCCTAAGCAATCACAAGTTCTAATAGGAATTATTACATTGTTGTTATATGACTTGTTCCTGAACAGCTTGAAGTACTGAGGGAGTAAAGGCATCCTTTATGTTTTGATTGCTGCTTGAAAATTAACATCCTAATGATAACTTTGGTTTCTTGGTAGTACTCAACAATACCAGTTGTGATAGTGTTAAAAAATGTTTTCTCTGTAG
Seq C2 exon
CAGATGAAGCCTGGACTACCTGTCATGGGACTTCAGTTTTGTGGATGGCCTACAGGAGTTCTTACTTCAAATGTTCAGTTTTCATCTCCTTTACCTACTCTTGGATCAGGGTTGGGATTATCAGAAGGGAATGGTAACTCATTCTTGACATCTAGTGTTCCTACAAGTAAAAGTGAATCACCAGCACTGCAGACTGAGAAAGTAGCTTCTGCCACCTGTACAGCAGTGGAAGTGGCCAAGCCAGTAGATCACCCAAACCCAAAACCAATACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.570
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(53.0=92.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAGTCCTACTGCAAGCGG
R:
ACTCCTGTAGGCCATCCACAA
Band lengths:
351-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]