GgaALTA0006884-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28078293-28079889:-
Coord C1 exon
chrUn_random:28079690-28079889
Coord A exon
chrUn_random:28078592-28078594
Coord C2 exon
chrUn_random:28078293-28078591
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ATGTTATAATTGTTCCTAAGTAG
3' ss Score
0.87
Exon sequences
Seq C1 exon
CTTAAAGCAGTGCATGAACAGCTTGCAGCCCTGTCCCAGCCCCAGCAGAACAAACCAAAGAAAAAAGAGAAGGACAAGAAGGAGAAGAAGAAGGAGAAGCACAAAAAGAAGGAAGAGCTGGAAGACAGCAAGAAGAGCAAAGCCAAGGAACCGCTATCCAAGAAGGCCAAGAAAAGTAACAGCAACAGCAGTACCTCCAG
Seq A exon
TAG
Seq C2 exon
TAAGAAGGAGCCTGTGACGGTGAAGAACAGCAAGCCCCCTCCAGCCTACGAGTCTGAGGAGGAGGAGAAGTGTAAGCCAATGTCCTATGAGGAGAAGAGGCAGCTGAGCCTGGACATTAACAAACTCCCTGGTGAAAAGCTGGGCCGAGTTGTCCACATCATCCAGTCGAGAGAACCCTCACTTAAAAACTCCAATCCCGATGAGATTGAAATTGACTTTGAGACATTAAAACCCTCCACGTTACGGGAGCTGGAGAGATATGTAACGTCGTGTTTGAGGAAGAAGAGGAAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295-13-15,13-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF057648=YL1=PD(35.2=96.9)
A:
NA
C2:
PF057648=YL1=PD(17.5=37.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAGAAGAGCAAAGCCA
R:
ACCGTCACAGGCTCCTTCTTA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]