GgaALTA0006884-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28078293-28079889:-
Coord C1 exon
chrUn_random:28079690-28079889
Coord A exon
NA
Coord C2 exon
chrUn_random:28078293-28078591
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTATAATTGTTCCTAAGTAGTAA
3' ss Score
1.74
Exon sequences
Seq C1 exon
CTTAAAGCAGTGCATGAACAGCTTGCAGCCCTGTCCCAGCCCCAGCAGAACAAACCAAAGAAAAAAGAGAAGGACAAGAAGGAGAAGAAGAAGGAGAAGCACAAAAAGAAGGAAGAGCTGGAAGACAGCAAGAAGAGCAAAGCCAAGGAACCGCTATCCAAGAAGGCCAAGAAAAGTAACAGCAACAGCAGTACCTCCAG
Seq A exon
NA
Seq C2 exon
TAAGAAGGAGCCTGTGACGGTGAAGAACAGCAAGCCCCCTCCAGCCTACGAGTCTGAGGAGGAGGAGAAGTGTAAGCCAATGTCCTATGAGGAGAAGAGGCAGCTGAGCCTGGACATTAACAAACTCCCTGGTGAAAAGCTGGGCCGAGTTGTCCACATCATCCAGTCGAGAGAACCCTCACTTAAAAACTCCAATCCCGATGAGATTGAAATTGACTTTGAGACATTAAAACCCTCCACGTTACGGGAGCTGGAGAGATATGTAACGTCGTGTTTGAGGAAGAAGAGGAAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295-13-15,13-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF057648=YL1=PD(35.2=96.9)
A:
NA
C2:
PF057648=YL1=PD(17.5=37.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAGAAGAGCAAAGCCA
R:
ACCGTCACAGGCTCCTTCTTA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]