RnoALTA0006092-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14240231-14241247:-
Coord C1 exon
chr7:14241048-14241247
Coord A exon
chr7:14240523-14240526
Coord C2 exon
chr7:14240231-14240522
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
TATATATCATCCCTTCATAGCAA
3' ss Score
6.36
Exon sequences
Seq C1 exon
CTCAAAGCCGTGCATGAGCAGCTTGCAGCCCTCTCACAGCCCCAACAGAACAAACCAAAGAAAAAGGAGAAGGACAAGAAGGAAAAGAAAAAGGAAAAGCACAAAAAGAAAGAAGAAATGGAGGAAAATAAAAAAAGCAAAGCCAAGGAACTTCCTCCCAAAAAGACAAAGAAAAATAACAGCAGCAACAGCAATGTGAG
Seq A exon
CAAG
Seq C2 exon
AAGGAACCAGCACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAAGAGGACAAGTGTAAGCCTATGTCTTATGAGGAGAAGCGACAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCAGTCGAGGGAACCATCACTTAAAAACTCCAACCCTGATGAGATTGAGATTGATTTTGAGACCCTGAAGCCATCTACACTACGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770-21-26,21-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAACAGCAATGTGAG
R:
AGGCTTACACTTGTCCTCTTCT
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]