BtaALTA0004607-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8889534-8890306:+
Coord C1 exon
chr7:8889534-8889733
Coord A exon
chr7:8890011-8890014
Coord C2 exon
chr7:8890015-8890306
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
TCTGCATCACCCCTTCGTAGCAA
3' ss Score
4.14
Exon sequences
Seq C1 exon
CTCAAAGCCGTGCACGAGCAGCTTGCAGCGCTTTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAAGACAAAAAGGAAAAGAAAAAAGAAAAGCACAAAAAGAAAGAGGAAGTGGAGGAGAATAAGAAAAGCAAAGCCAAGGAACTTCCTCCCAAAAAGACCAAGAAAAATAACAGCAGTAACAGCAGCACGAG
Seq A exon
CAAG
Seq C2 exon
AAGGAGCCAGCACCCTTGAAGAGCAAGCCCCCTCCCGCCTATGAGTCGGAGGAAGAGGACAAATGCAAGCCCATGTCATATGAGGAAAAGCGGCAGCTGAGCCTGGACATCAACAAACTGCCTGGCGAGAAGCTGGGCCGCGTGGTGCACATCATTCAGTCGAGGGAGCCCTCCCTCAAGAACTCCAACCCCGACGAGATCGAGATTGACTTCGAGACCCTGAAGCCATCCACCCTGCGTGAACTGGAGCGCTACGTCACCTCCTGTTTGCGGAAGAAGAGGAAACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495-12-19,12-18,12-17-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGTAACAGCAGCACG
R:
ACATGGGCTTGCATTTGTCCT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development