GgaALTA0007201-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000014178 | SCUBE1
Description
NA
Coordinates
chr1:70750870-70753218:-
Coord C1 exon
chr1:70753096-70753218
Coord A exon
NA
Coord C2 exon
chr1:70750870-70751007
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
AGGTCAATTCCCTTGTACAGACA
3' ss Score
4.22
Exon sequences
Seq C1 exon
CAACAGATTCCTTAGCCCCTCCAATCAAGCAGAAAGCTCGTTTTAAAATTAAAGATGCAAAGTGCCACTTACGGCCTCGCAGCAAAGAAAAAACAAAAGATGCTGGGAAGCAAGCTGTGTTAG
Seq A exon
NA
Seq C2 exon
ACAACTGCCAGGTGACTTTTGTGAATCTCAAGTGTGATTCCTCCAAGAAAAAGCGCCGGGGCCGCAAGTCACCATCAAAAGAAGTGTCCCATATCACTGCAGAGTTTGAAGTGGAGATGAAGTCAGAAGAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-12-15,12-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAAGCAAGCTGTGTTA
R:
CTTTTGATGGTGACTTGCGGC
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]