MmuALTA1004761-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83618552-83620172:-
Coord C1 exon
chr15:83620056-83620172
Coord A exon
NA
Coord C2 exon
chr15:83618552-83618689
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
GTGTACTCTTCTCTCTTCAGACA
3' ss Score
10.06
Exon sequences
Seq C1 exon
ATGCCCCCACCACCCCTATCAGACAGAAGGCCCGCTTCAAGATCAGAGATGCCAAGTGCCATCTCCAGCCCCGCAGCCAGGAGCGAGCCAAGGATACCCTGAGGCATCCCCTTTTAG
Seq A exon
NA
Seq C2 exon
ACAACTGCCACGTGACTTTTGTGACCCTCAAGTGTGACTCCTCCAAGAAGAGGCGCCGAGGCCGCAAGTCCCCATCCAAGGAGGTGTCCCACATCACAGCAGAGTTTGAGGTGGAGATGAAGGTGGATGAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763-24-23,24-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCCAAGTGCCATCTCC
R:
TGGAGGAGTCACACTTGAGGG
Band lengths:
117-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types