GgaALTA0007740-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000015459 | ZFP92
Description
NA
Coordinates
chr1:95225199-95226006:-
Coord C1 exon
chr1:95225983-95226006
Coord A exon
NA
Coord C2 exon
chr1:95225199-95225355
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CACCTCGCTCTGAATGGCAGCTT
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTGGCGGCGCCGGGCGCCCTGCAG
Seq A exon
NA
Seq C2 exon
CTTTGTGCCCGAGGGTGACCATGCAGAGAACGCTCAGCCAGCGACGGCACTTCGGGAGCAGACTGAGGGACCCCGAGGAACCTGAGAGATGGAACTCTACGCTGGGATGACTCCCACAGCCTCCATGGTCCGATGCAGCCACAGGATAACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015459-0-3,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]