GgaEX0022687 @ galGal3
Exon Skipping
Gene
ENSGALG00000015459 | ZFP92
Description
NA
Coordinates
chr1:95225199-95226006:-
Coord C1 exon
chr1:95225983-95226006
Coord A exon
chr1:95225827-95225886
Coord C2 exon
chr1:95225199-95225388
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGCAGAGCCTTTGTCTGTAGGCA
3' ss Score
2.16
5' ss Seq
GCTGCCCGT
5' ss Score
-13.56
Exon sequences
Seq C1 exon
GTGGCGGCGCCGGGCGCCCTGCAG
Seq A exon
GCACCGTGGAGGAAGGACCTGCCCGGAGAAGAGACTGAAAGGAGGAGGGGAGGGCCGGCT
Seq C2 exon
CATGGGATGTTCACACCTCGCTCTGAATGGCAGCTTTGTGCCCGAGGGTGACCATGCAGAGAACGCTCAGCCAGCGACGGCACTTCGGGAGCAGACTGAGGGACCCCGAGGAACCTGAGAGATGGAACTCTACGCTGGGATGACTCCCACAGCCTCCATGGTCCGATGCAGCCACAGGATAACTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015459-'0-1,'0-0,1-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]