GgaALTA0008764-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr2:411048-412021:-
Coord C1 exon
chr2:411893-412021
Coord A exon
NA
Coord C2 exon
chr2:411048-411148
Length
0 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TCCTGCCCAATTTCCAGCAGGTG
3' ss Score
7.23
Exon sequences
Seq C1 exon
AGCCCGTTGGTCCTGGCTGTGCGAGCAGTGAAGCCCTGCTGCAAGTGGAGACAGAGCAGTCTCCTAAGGGGAGATGCAGGAACCCGGAGGACAGCAGGAGCCCATCGGATGCACCTGACAGTAGTGCAC
Seq A exon
NA
Seq C2 exon
GTGCCGACGTGGGGATCCCAGGAGAGGTCCTGCAGGAGGGGATCGGCGCCGAGGAGGGTCTGCAAAAGGAGGACGTGGGAGGTGCAGGGAACCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710-5-5,5-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCACCTGACAGTAGTGC
R:
GTCCTCCTTTTGCAGACCCTC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]