GgaINT0099976 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:411670-412021:-
Coord C1 exon
chr2:411893-412021
Coord A exon
chr2:411803-411892
Coord C2 exon
chr2:411670-411802
Length
90 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCCCACCTCTGCCCTTGTAGCAC
3' ss Score
8.12
Exon sequences
Seq C1 exon
AGCCCGTTGGTCCTGGCTGTGCGAGCAGTGAAGCCCTGCTGCAAGTGGAGACAGAGCAGTCTCCTAAGGGGAGATGCAGGAACCCGGAGGACAGCAGGAGCCCATCGGATGCACCTGACAGTAGTGCAC
Seq A exon
GTGAGTGCCTGGAGAGTCTGCCAAAGCGAGGGACCCTGAGCCCTGGCTGTGTCTCACTCGGGGTCGTAATCCCCACCTCTGCCCTTGTAG
Seq C2 exon
CACACGTTCCTCAGGAAGCCATAGGTGCTCCAGCAGACCTCAGCCACCCAGCTGCCTCCCGTCCCTGCCCCATCCCCACGTGCTGCCAGGAAGTGCTGACCCTGAGCCTGCCTCCGTCTCCTCCCCCTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=NA C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGGGAGATGCAGGAACCC
R:
CTCAGGGTCAGCACTTCCTGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]