GgaINT0099976 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BVL4]
Coordinates
chr2:501178-501531:-
Coord C1 exon
chr2:501403-501531
Coord A exon
chr2:501313-501402
Coord C2 exon
chr2:501178-501312
Length
90 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCCCACCTCTGCCCTTGTAGCAC
3' ss Score
8.12
Exon sequences
Seq C1 exon
AGCCCGTTGGTCCTGGCTGTGCGAGCAGTGAAGCCCTGCTGCAAGTGGAGACAGAGCAGTCTCCTAAGGGGAGATGCAGGAACCCGGAGGACAGCAGGAGCCCATCGGATGCACCTGACAGTAGTGCAC
Seq A exon
GTGAGTGCCTGGAGAGTCTGCCAAAGCGAGGGACCCTGAGCCCTGGCTGTGTCTCACTCGGGGTCGTAATCCCCACCTCTGCCCTTGTAG
Seq C2 exon
CACACGTTCCTCAGGAAGCCATAGGTGCTCCAGCAGACCTCAGCCACCCAGCTGCCTCCCGTCCCTGCCCCATCCCCACGTGCTGCCAGGAAGTGCTGACCCTGAGCCTGCCTCCGTCTCCTCCCCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019710:ENSGALT00000007819:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGGGAGATGCAGGAACCC
R:
CTCAGGGTCAGCACTTCCTGG
Band lengths:
171-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]