GgaALTA0008765-2/3 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr2:494660-496226:-
Coord C1 exon
chr2:496039-496226
Coord A exon
chr2:495399-495406
Coord C2 exon
chr2:494660-495398
Length
8 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TAATTGCTGTTTCTCAGCAGATG
3' ss Score
6.7
Exon sequences
Seq C1 exon
GATCAGCTCTTCCCCGAGGGGTGCTGGTGCCCAGCATCAGCTCTTTGCACACCCGCTTCTTCCCTCAGGACCTGGGGACACCAATTCAAAACCCGCTCTGCTGTTGTCAACTGAGGATGGGGAGGATTCAGCTTCCAGGACCCACGGGCTGCTGGAGGAGGGAGCAGTGCTGGGGCACAGTGGTGACG
Seq A exon
ATGAGAAG
Seq C2 exon
ATCGTGATCAAGACAGAAGAGCAGCAGCCGCAGGAGGAAGGACTGGAAATGCTGGCTCTGCCACAGGTGCCCTCTGTGAGGCTGGAAGAGGAGATTCCTCTGGGCCAGGAGCCGCCGGTGCCTTGGGAGAGCCACGCCGTCATGGACGGACAGAAGGGAGCAGGAGAGGGCTTAGGGGAGCTCTGCAAACATGGGGTCCCTCAGCCTGAATTCAAGCCCGTGGTCATCCCAGTGGAAGCTCGCCCAGCCCCAGCCTTACCTTTCCCAACAGAGCACGGGCACGGCACAGAGACTGAGCAGCCGTTCGCTCTGCCCCAGGGGCTGCCGCTGGGAGAGGACACTGCCACAGAGCCCGCCTCGATGCAGGCTGGCACGGAGGAGCACGGCCCATCTGGCACAGGGGATGAGCCCCGCGTGCCGCCGCCGGGCTGGAAGAACGTCCGGCTGAAACGCAACCTCCTGGCACGGCAGCAGAGCCACGCGAGGAAGAGCAACGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019711-6-5,6-4,6-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127732=DZR=WD(100=23.1),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=PU(36.0=3.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATGGGGAGGATTCAGCT
R:
GCTGCTGCTCTTCTGTCTTGA
Band lengths:
104-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]