GgaINT0101063 @ galGal4
Intron Retention
Description
NA
Coordinates
chr2:494660-496226:-
Coord C1 exon
chr2:496039-496226
Coord A exon
chr2:495410-496038
Coord C2 exon
chr2:494660-495409
Length
629 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AATTAATTGCTGTTTCTCAGCAG
3' ss Score
3.59
Exon sequences
Seq C1 exon
GATCAGCTCTTCCCCGAGGGGTGCTGGTGCCCAGCATCAGCTCTTTGCACACCCGCTTCTTCCCTCAGGACCTGGGGACACCAATTCAAAACCCGCTCTGCTGTTGTCAACTGAGGATGGGGAGGATTCAGCTTCCAGGACCCACGGGCTGCTGGAGGAGGGAGCAGTGCTGGGGCACAGTGGTGACG
Seq A exon
GTGAGTCACAGCAGTGGTGGCATCAGTGGCACCGCATTGAGTGCCAGGGGGTGGTGGGGGAGGGTTGCGTGCAGGTTGAGTGAATGGAAATTAAAAACAGGGAAGGAAAATCAGTGCCAAAGGGGGAAAGAAATCCAGAAGAGACCAAAACTCTAAACCCAGAGCACCCCACTTGGCAAGAGTGGAAAAAGCGTGGGCAAGGCTTAGTGCGAGGGTGGCTCTGTGGCCACTCAGTCAGTTCTGCTCCTGGAACGTTTTGCTTTGGTCCTTTCCTCCAGATTTACCCAACTAATCTCTGCCGTTCCTAACAGTTCCCTCTAGGACAAATGACTGCAGCTGCAGTGTTGCTTCCATGTTTTCCTGATTTGGGTTCTTTATGAATGTTATGTTGTTGGTCTGCTGAATGTCCCCAGAGATGACCAGGTAGCCCCCAGCAGACACAGCACCCTTCCACCTTGTGCCCTTCTCCCCCTTTGCTCATGGTAGTACTCTCTTGCTCCATCTGTAGCAACACATTTGCTGGTTTGTCTCACCCACGTGCTGCAGGGGAAGCTCAGCTCCTGCTCCACTGCTGGGGATACAGGCATGGGAGAGCTTTACTTTGCTGGGAATTAATTGCTGTTTCTCAG
Seq C2 exon
CAGATGAGAAGATCGTGATCAAGACAGAAGAGCAGCAGCCGCAGGAGGAAGGACTGGAAATGCTGGCTCTGCCACAGGTGCCCTCTGTGAGGCTGGAAGAGGAGATTCCTCTGGGCCAGGAGCCGCCGGTGCCTTGGGAGAGCCACGCCGTCATGGACGGACAGAAGGGAGCAGGAGAGGGCTTAGGGGAGCTCTGCAAACATGGGGTCCCTCAGCCTGAATTCAAGCCCGTGGTCATCCCAGTGGAAGCTCGCCCAGCCCCAGCCTTACCTTTCCCAACAGAGCACGGGCACGGCACAGAGACTGAGCAGCCGTTCGCTCTGCCCCAGGGGCTGCCGCTGGGAGAGGACACTGCCACAGAGCCCGCCTCGATGCAGGCTGGCACGGAGGAGCACGGCCCATCTGGCACAGGGGATGAGCCCCGCGTGCCGCCGCCGGGCTGGAAGAACGTCCGGCTGAAACGCAACCTCCTGGCACGGCAGCAGAGCCACGCGAGGAAGAGCAACGGCTCCTTCATCTGCACGGCCTGTGGGAAGAGCCTGGCCCACCACGCTGCTCTGCTGCGGCACCAGCGCCTGCACACGGGAGAGCGGCCCTTCCAGTGCCCCGCCTGCGGGAAGAGCTTCAACGAGAAGTCCAACCTCAACAAACACTACCGCATCCACACCGGGGAGCGGCCCTACTGCTGCCCGGCCTGCGGCAAGGGCTTCATCCAGAAGCACCACCTCCAGAAACACCAACGCATCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019711:ENSGALT00000007818:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127732=DZR=WD(100=23.1),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=PU(36.0=3.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAACCCGCTCTGCTGTT
R:
GGATGACCACGGGCTTGAATT
Band lengths:
344-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]