GgaALTA0008926-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7197491-7198291:+
Coord C1 exon
chr18:7197491-7197670
Coord A exon
chr18:7198187-7198189
Coord C2 exon
chr18:7198190-7198291
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ATTTGCACCATTTATTCCAGCAG
3' ss Score
4.54
Exon sequences
Seq C1 exon
ACAATGGGATGAGCAGTTGGACCCTCGGCTAAATGCTAAGCAGAAAGAGGCTGTTCTGGCTATCACTACCCCACTTTCAATACAACTGCCTCCTGTTCTTATCATCGGTCCCTATGGGACAGGAAAAACGTTCACGCTGGCTCAGGCAGTCAAGCACATACTGCAACAACAGGATACTAG
Seq A exon
CAG
Seq C2 exon
GATTCTCATTTGCACCCATTCTAATAGTGCTGCTGATCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAGGCAAGACCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439-16-17,16-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(41.8=83.6)
A:
NA
C2:
PF130861=AAA_11=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAACGTTCACGCTGGCTC
R:
AGCAGCACTATTAGAATGGGTGC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]