GgaINT0127311 @ galGal3
Intron Retention
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7197491-7198291:+
Coord C1 exon
chr18:7197491-7197670
Coord A exon
chr18:7197671-7198186
Coord C2 exon
chr18:7198187-7198291
Length
516 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ATTTGCACCATTTATTCCAGCAG
3' ss Score
4.54
Exon sequences
Seq C1 exon
ACAATGGGATGAGCAGTTGGACCCTCGGCTAAATGCTAAGCAGAAAGAGGCTGTTCTGGCTATCACTACCCCACTTTCAATACAACTGCCTCCTGTTCTTATCATCGGTCCCTATGGGACAGGAAAAACGTTCACGCTGGCTCAGGCAGTCAAGCACATACTGCAACAACAGGATACTAG
Seq A exon
GTGAGGTGGAGCTCTAAATAGAGCAATACATGATTAGCAAAGAGTACCATTTCTTATTAAGTTCACGTTAAACGTAGAAGTATAGAATTTCCATCCAGCTTAAAAACAACCAAACCCGAGCCATCTGTTATTGTTTCAAATGGTAAAGTAATTTTATAGTCTTAGCCTGTATTTTCCATTTTAAAACTATTTAAAATTGACAATATGGAGAATGACTGTGATTTGCTCAACGTGGAAAGCTGTGCAGTATATTTGATAGTAAAAGCTGTTCCTTACTTAAAATCAAGTCTGGATTAATAACTGCAATTGTTGGAAAACTGTTTAAACTTTAAACCTTTACATAAGTGAAGGATTTAAGTTAAAGGGCTGAACCATGTGGACTAGAGTAGGTCAGTGCCTAGTTTCATTAAGAGAAATGTACAGGAAGATGGCCATTATTTCCTTTGTTTTGTATTCTACTGCTTTGAATTGTTTTCTGTTTCTTCATTGCTTTTTTATTTGCACCATTTATTCCAG
Seq C2 exon
CAGGATTCTCATTTGCACCCATTCTAATAGTGCTGCTGATCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAGGCAAGACCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439:ENSGALT00000005876:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(41.8=83.6)
A:
NA
C2:
PF130861=AAA_11=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGGGATGAGCAGTTGGAC
R:
GTCTTGCCTGGGGATTGCC
Band lengths:
278-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]