GgaALTA0009046-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr3:107371563-107373854:+
Coord C1 exon
chr3:107371563-107371664
Coord A exon
NA
Coord C2 exon
chr3:107373754-107373854
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGGTGCG
5' ss Score
-15.04
3' ss Seq
CCCCATGCTCTTCTCAGCAGAGG
3' ss Score
6.01
Exon sequences
Seq C1 exon
CGGATGCGGAGGACGGCCCCGATGAGACGGCGGGAGCGGCGCTGGTGCTGCCCGACGACCTGCTGCTGGGCCGCGGCCTGGCCTGCGAGAAGGGACCGCTAG
Seq A exon
NA
Seq C2 exon
AGGCACTGGTGGGGAAGATCGCCATCCCAGCGTACGCGCTGAGCGACGACGACTGCTCCTCCGGGTACCAGCAGCTGAGCGTGGACAGCGACCCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022855-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGAGAAGGGACCGCTAG
R:
CACGCTCAGCTGCTGGTAC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]